6CNQ	Transcription Dna	date	Mar 08, 2018
title	Mbd2 In Complex With Methylated Dna
authors	K.Liu, C.Xu, J.Min, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Methyl-Cpg-Binding Domain Protein 2 Chain: A, B Fragment: Residues 143-220 Synonym: Demethylase,Dmtase,Methyl-Cpg-Binding Protein Mbd2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mbd2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
Molecule: Dna (5'-D(Gpcpcpapap(5cm)Pgptptpgpgpc Chain: D, C, E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 31	R_factor 0.206 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.500 40.500 202.896 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	5CM, UNX	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA., Liu K, Xu C, Lei M, Yang A, Loppnau P, Hughes TR, Min J, J Biol Chem. 2018 Mar 22. pii: RA118.001785. doi: 10.1074/jbc.RA118.001785. PMID:29567833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (6cnq.pdb1.gz) 44 Kb Biological Unit Coordinates (6cnq.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 6CNQ CSU: Contacts of Structural Units for 6CNQ Structure Factors (2233 Kb) Retrieve 6CNQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CNQ from S2C, [Save to disk]

View 6CNQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6CNQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cnq_E] [6cnq_C] [6cnq_A] [6cnq_F] [6cnq_D] [6cnq_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6CNQ

Community annotation for 6CNQ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---