6COB Lyase date Mar 12, 2018
title Athnl Enantioselectivity Mutant At-A9-H7 Apo, Y13c,Y121l,P12 C131t,F179l,A209i
authors B.J.Jones, R.J.Kazlauskas, R.Desrouleaux
compound source
Molecule: Alpha-Hydroxynitrile Lyase
Chain: A, B
Fragment: Athnl
Synonym: Athnl,(R)-Hydroxynitrile Lyase,(R)-Oxynitrilase, Methylesterase 5,Atmes5;
Ec: 4.1.2.10
Engineered: Yes
Mutation: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Hnl, Mes5, At5g10300, F18d22_70
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.982 87.110 123.356 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand CL, GOL enzyme Lyase E.C.4.1.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (6cob.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 6COB
  • CSU: Contacts of Structural Units for 6COB
  • Structure Factors (1337 Kb)
  • Retrieve 6COB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6COB from S2C, [Save to disk]
    • View 6COB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6COB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cob_B] [6cob_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6COB
  • Community annotation for 6COB at PDBWiki (http://pdbwiki.org)

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