6CPR Cytokine date Mar 14, 2018
title Crystal Structure Of 4-1bbl4-1bb Complex In C2 Space Group
authors B.Aruna, D.M.Zajonc
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 9
Chain: A, B, C
Fragment: Residues 80-244
Synonym: 4-1bb Ligand,4-1bbl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf9
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: D, F, E
Fragment: Residues 23-160
Synonym: 4-1bb Ligand Receptor,Cdw137,T-Cell Antigen 4-1bb Cell Antigen Ila;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf9, Cd137, Ila
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: C 1 2 1
R_factor 0.249 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.280 66.504 129.356 90.00 103.09 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceCrystal structures of the human 4-1BB receptor bound to its ligand 4-1BBL reveal covalent receptor dimerization as a potential signaling amplifier., Bitra A, Doukov T, Croft M, Zajonc DM, J Biol Chem. 2018 May 2. pii: RA118.003176. doi: 10.1074/jbc.RA118.003176. PMID:29720398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (6cpr.pdb1.gz) 127 Kb
  • CSU: Contacts of Structural Units for 6CPR
  • Structure Factors (777 Kb)
  • Retrieve 6CPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CPR from S2C, [Save to disk]
  • View 6CPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CPR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cpr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cpr_F] [6cpr_A] [6cpr_C] [6cpr_B] [6cpr_D] [6cpr_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CPR
  • Community annotation for 6CPR at PDBWiki (http://pdbwiki.org)

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