6CQ2 Isomerase Dna date Mar 14, 2018
title Crystal Structure Of Mycobacterium Tuberculosis Topoisomeras Complex With Oligonucleotide Mts2-12 And Magnesium
authors N.Cao, A.Thirunavukkaraus, K.Tan, Y.C.Tse-Dinh
compound source
Molecule: Dna Topoisomerase 1
Chain: A
Synonym: Dna Topoisomerase I,Omega-Protein,Relaxing Enzyme, Untwisting Enzyme;
Ec: 5.99.1.2
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Topa, Rv3646c, Mtcy15c10.06
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-His6-Mocr Tev-Lic

Molecule: Dna (5'-D(Ptptpcpcpgpcptptpgpa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis H37rv
Organism_taxid: 83332
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.625 44.683 128.866 90.00 90.61 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand MG, PO4 enzyme Isomerase E.C.5.99.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInvestigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site., Cao N, Tan K, Annamalai T, Joachimiak A, Tse-Dinh YC, Nucleic Acids Res. 2018 Jun 14. pii: 5037723. doi: 10.1093/nar/gky492. PMID:29905859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (6cq2.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 6CQ2
  • CSU: Contacts of Structural Units for 6CQ2
  • Structure Factors (408 Kb)
  • Retrieve 6CQ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CQ2 from S2C, [Save to disk]
  • View 6CQ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CQ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cq2_A] [6cq2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CQ2
  • Community annotation for 6CQ2 at PDBWiki (http://pdbwiki.org)

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