6CQ4 Transferase date Mar 14, 2018
title Tbk1 In Complex With Cyclohexyl Analog Of Amlexanox
authors T.S.Beyett, J.J.G.Tesmer
compound source
Molecule: Serinethreonine-Protein Kinase Tbk1
Chain: A
Synonym: Nf-Kappa-B-Activating Kinase,T2k,Tank-Binding Kina
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbk1, Nak
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Ph7pfb
symmetry Space Group: P 32 2 1
R_factor 0.233 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.604 134.604 84.505 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand F8P enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, synthesis, and biological activity of substituted 2-amino-5-oxo-5H-chromeno[2,3-b]pyridine-3-carboxylic acid derivatives as inhibitors of the inflammatory kinases TBK1 and IKKepsilon for the treatment of obesity., Beyett TS, Gan X, Reilly SM, Gomez AV, Chang L, Tesmer JJG, Saltiel AR, Showalter HD, Bioorg Med Chem. 2018 Nov 1;26(20):5443-5461. doi: 10.1016/j.bmc.2018.09.020., Epub 2018 Sep 20. PMID:30270002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (6cq4.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 6CQ4
  • CSU: Contacts of Structural Units for 6CQ4
  • Structure Factors (170 Kb)
  • Retrieve 6CQ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CQ4 from S2C, [Save to disk]
  • View 6CQ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CQ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cq4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CQ4
  • Community annotation for 6CQ4 at PDBWiki (http://pdbwiki.org)

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