6CQD Transferase date Mar 14, 2018
title Crystal Structure Of Hpk1 In Complex With Atp Analogue (Ampp
authors P.Wu, I.Lehoux, Y.Franke, K.Mortara, W.Wang
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Synonym: Hkp1, Hematopoietic Progenitor Kinase, Mapkerk Ki Kinase Kinase 1, Mekkk 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map4k1, Hpk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.886 51.882 107.500 90.00 131.03 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand ANP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHematopoietic Progenitor Kinase-1 Structure in a Domain-Swapped Dimer., Wu P, Sneeringer CJ, Pitts KE, Day ES, Chan BK, Wei B, Lehoux I, Mortara K, Li H, Wu J, Franke Y, Moffat JG, Grogan JL, Heffron TP, Wang W, Structure. 2018 Nov 13. pii: S0969-2126(18)30386-1. doi:, 10.1016/j.str.2018.10.025. PMID:30503777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (6cqd.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 6CQD
  • CSU: Contacts of Structural Units for 6CQD
  • Structure Factors (888 Kb)
  • Retrieve 6CQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CQD from S2C, [Save to disk]
  • View 6CQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CQD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cqd_A] [6cqd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CQD
  • Community annotation for 6CQD at PDBWiki (http://pdbwiki.org)

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