6CRI Viral Protein, Protein Transport date Mar 18, 2018
title Structure Of The Cargo Bound Ap-1:Arf1:Tetherin-Nef Stable C Trimer
authors K.L.Morris, C.Z.Buffalo, J.H.Hurley
compound source
Molecule: Bone Marrow Stromal Antigen 2, Protein Nef Chimer
Chain: T, N, c, Y, d, Z
Fragment: Tetherin Unp Residues 2-26, Nef Unp Residues 1-20
Synonym: Bst-2, Hm1.24 Antigen, Tetherin
Engineered: Yes
Organism_scientific: Homo Sapiens, Human Immunodeficiency V
Organism_common: Human, Hiv-1
Organism_taxid: 9606, 11676
Gene: Bst2, Nef
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Beta-1
Chain: B, I, J
Synonym: Adaptor Protein Complex Ap-1 Subunit Beta-1, Adapt Protein Complex 1 Subunit Beta-1, Beta-1-Adaptin, Beta-Adap Clathrin Assembly Protein Complex 1 Beta Large Chain, Golgi Ha1ap1 Adaptin Beta Subunit;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ap1b1, Adtb1, Bam22, Clapb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Adp-Ribosylation Factor 1
Chain: C, H, K, U, L, V
Synonym: Arf1
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Gamma-1
Chain: G, Q, R
Synonym: Adaptor Protein Complex Ap-1 Subunit Gamma-1, Adap Related Protein Complex 1 Subunit Gamma-1, Clathrin Assembl Complex 1 Gamma-1 Large Chain, Gamma-Adaptin, Gamma1-Adapti Adaptor Ha1ap1 Adaptin Subunit Gamma-1;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap1g1, Adtg, Clapg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Mu-1
Chain: M, W, X
Synonym: Ap-Mu Chain Family Member Mu1a, Adaptor Protein Co Subunit Mu-1, Adaptor-Related Protein Complex 1 Subunit Mu- Clathrin Assembly Protein Complex 1 Mu-1 Medium Chain 1, Cl Coat Assembly Protein Ap47, Clathrin Coat-Associated Protei Golgi Adaptor Ha1ap1 Adaptin Mu-1 Subunit, Mu-Adaptin 1, M Adaptin;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap1m1, Cltnm
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Sigma-3
Chain: S, a, b
Synonym: Adaptor Protein Complex Ap-1 Subunit Sigma-1c, Ada Related Protein Complex 1 Subunit Sigma-1c, Clathrin Assemb Complex 1 Sigma-1c Small Chain, Golgi Adaptor Ha1ap1 Adapt 1c Subunit, Sigma 1c Subunit Of Ap-1 Clathrin, Sigma-Adapti Sigma1c-Adaptin;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ap1s3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.80 Å
Gene
Ontology
ChainFunctionProcessComponent
J, B, I


K, V, C, L, H, U
  • phospholipase D activator ac...


  • M, W, X


    Q, R, G


    S, a, b


    T, N, d, Y, Z, c


    Primary referenceHIV-1 Nefs Are Cargo-Sensitive AP-1 Trimerization Switches in Tetherin Downregulation., Morris KL, Buffalo CZ, Sturzel CM, Heusinger E, Kirchhoff F, Ren X, Hurley JH, Cell. 2018 Jul 26;174(3):659-671.e14. doi: 10.1016/j.cell.2018.07.004. PMID:30053425
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (969 Kb) [Save to disk]
  • Biological Unit Coordinates (6cri.pdb1.gz) 955 Kb
  • CSU: Contacts of Structural Units for 6CRI
  • Retrieve 6CRI in mmCIF format [Save to disk]
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  • Fold representative 6cri from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cri_Q] [6cri_C] [6cri_K] [6cri_T] [6cri_L] [6cri_H] [6cri_X] [6cri_Z] [6cri_d] [6cri_G] [6cri_U] [6cri_b] [6cri_J] [6cri_B] [6cri_S] [6cri_W] [6cri_I] [6cri_c] [6cri_a] [6cri_V] [6cri_Y] [6cri_R] [6cri_N] [6cri_M]
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