6CU9 Transferase, Lyase Dna date Mar 24, 2018
title Structure Of Human Dna Polymerase Beta Complexed With 8-Clg Template Base Paired With Incoming Non-Hydrolyzable Ctp And
authors M.C.Koag, S.Lee
compound source
Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpcpgpapcp(Cgm) Ptpcpgpcpaptpcpapgpc)-3');
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Gpcptpgpaptpgpcpgpa)-3')
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Pgptpcpgpg)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.707 80.049 55.602 90.00 107.70 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand 0KX, F74, MN, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (6cu9.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 6CU9
  • CSU: Contacts of Structural Units for 6CU9
  • Structure Factors (231 Kb)
  • Retrieve 6CU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CU9 from S2C, [Save to disk]
  • View 6CU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CU9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cu9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cu9_A] [6cu9_T] [6cu9_P] [6cu9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CU9
  • Community annotation for 6CU9 at PDBWiki (http://pdbwiki.org)

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