6CV8 HADDOCK structure of the Rous sarcoma virus matrix protein (M-domain) in complex with inositol 1,4,5-trisphosphate date
authors Vlach, J., Saad, J.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand I3P enzyme
Primary referenceStructural basis for targeting avian sarcoma virus Gag polyprotein to the plasma membrane for virus assembly., Vlach J, Eastep GN, Ghanam RH, Watanabe SM, Carter C, Saad JS, J Biol Chem. 2018 Oct 11. pii: RA118.003944. doi: 10.1074/jbc.RA118.003944. PMID:30309983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]
  • Biological Unit Coordinates (6cv8.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 6CV8
  • CSU: Contacts of Structural Units for 6CV8
  • Original NMR restraints for 6CV8 from PDB
  • Retrieve 6CV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CV8 from S2C, [Save to disk]
    • View 6CV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CV8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cv8 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cv8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CV8
  • Community annotation for 6CV8 at PDBWiki (http://pdbwiki.org)

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