6CVQ	Hydrolase Dna Rna	date	Mar 28, 2018
title	Human Aprataxin (Aptx) H201q Bound To Rna-Dna, Amp And Zn Pr Complex
authors	M.J.Schellenberg, P.S.Tumbale, R.S.Williams
compound		source
Molecule: Aprataxin Chain: A, B Fragment: Aprataxin Catalytic Domain Synonym: Forkhead-Associated Domain Histidine Triad-Like Pr Hit; Ec: 3.1.11.7,3.1.12.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Aptx, Axa1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Dnarna (5'-R(Pg)-D(Ptptpaptpgpaptptpc) Chain: D, G Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: Chemically Synthesized Nucleic Acid
Molecule: Dna (5'-D(Gpapaptpcpaptpapapc)-3') Chain: E, H Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.118 R_Free 0.168
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.571 116.049 117.215 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	AMP, BME, GOL, NA, ZN	enzyme	Hydrolase E.C.3.1.11.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease., Tumbale P, Schellenberg MJ, Mueller GA, Fairweather E, Watson M, Little JN, Krahn J, Waddell I, London RE, Williams RS, EMBO J. 2018 Jun 22. pii: embj.201798875. doi: 10.15252/embj.201798875. PMID:29934293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk] Biological Unit Coordinates (6cvq.pdb1.gz) 134 Kb Biological Unit Coordinates (6cvq.pdb2.gz) 127 Kb LPC: Ligand-Protein Contacts for 6CVQ CSU: Contacts of Structural Units for 6CVQ Structure Factors (1468 Kb) Retrieve 6CVQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CVQ from S2C, [Save to disk]

View 6CVQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6CVQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cvq_B] [6cvq_E] [6cvq_H] [6cvq_A] [6cvq_D] [6cvq_G] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6CVQ

Community annotation for 6CVQ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---