6CVR	Hydrolase Dna Rna	date	Mar 28, 2018
title	Human Aprataxin (Aptx) S242n Bound To Rna-Dna, Amp And Zn Pr Complex
authors	M.J.Schellenberg, P.S.Tumbale, R.S.Williams
compound		source
Molecule: Aprataxin Chain: A, B Fragment: Aprataxin Catalytic Domain Synonym: Forkhead-Associated Domain Histidine Triad-Like Pr Hit; Ec: 3.1.11.7,3.1.12.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Aptx, Axa1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Dnarna (5'-R(Pg)-D(Ptptpaptpgpaptptpc) Chain: D, G Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'-D(Gpapaptpcpaptpapapc)-3') Chain: E, H Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.166 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.616 116.056 117.563 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.88 Å
ligand	AMP, ZN	enzyme	Hydrolase E.C.3.1.11.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease., Tumbale P, Schellenberg MJ, Mueller GA, Fairweather E, Watson M, Little JN, Krahn J, Waddell I, London RE, Williams RS, EMBO J. 2018 Jun 22. pii: embj.201798875. doi: 10.15252/embj.201798875. PMID:29934293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (6cvr.pdb1.gz) 118 Kb Biological Unit Coordinates (6cvr.pdb2.gz) 116 Kb LPC: Ligand-Protein Contacts for 6CVR CSU: Contacts of Structural Units for 6CVR Structure Factors (1137 Kb) Retrieve 6CVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CVR from S2C, [Save to disk]

View 6CVR in 3D

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Visual 3D analysis of 6CVR

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cvr_E] [6cvr_B] [6cvr_D] [6cvr_A] [6cvr_G] [6cvr_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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