6CWS Cytokine date Mar 30, 2018
title The Nmr Solution Structure Of Ccl28
authors M.A.Thomas, F.C.Peterson, B.F.Volkman
compound source
Molecule: C-C Motif Chemokine 28
Chain: A
Synonym: Mucosae-Associated Epithelial Chemokine,Mec,Protei Small-Inducible Cytokine A28;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl28, Scya28
Expression_system: Aphyosemion Etsamense
Expression_system_taxid: 310954
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Solution Structure of CCL28 Reveals Structural Lability that Does Not Constrain Antifungal Activity., Thomas MA, He J, Peterson FC, Huppler AR, Volkman BF, J Mol Biol. 2018 Jun 15. pii: S0022-2836(18)30191-8. doi:, 10.1016/j.jmb.2018.06.001. PMID:29913161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (670 Kb) [Save to disk]
  • Biological Unit Coordinates (6cws.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 6CWS
  • Original NMR restraints for 6CWS from PDB
  • Retrieve 6CWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CWS from S2C, [Save to disk]
  • View 6CWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CWS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cws from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cws_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CWS
  • Community annotation for 6CWS at PDBWiki (http://pdbwiki.org)

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