6CX1 Virus date Apr 02, 2018
title Cryo-Em Structure Of Seneca Valley Virus-Anthrax Toxin Recep Complex
authors N.Jayawardena, L.Burga, R.Easingwood, Y.Takizawa, M.Wolf, M.Bosti
compound source
Molecule: Anthrax Toxin Receptor 1
Chain: E
Synonym: Tumor Endothelial Marker 8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Antxr1, Atr, Tem8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Capsid Protein Vp1
Chain: A
Fragment: Residues 674-931
Organism_scientific: Senecavirus A
Organism_taxid: 390157

Molecule: Capsid Protein Vp2
Chain: C
Fragment: Residues 162-429
Organism_scientific: Senecavirus A
Organism_taxid: 390157

Molecule: Capsid Protein Vp3
Chain: B
Fragment: Residues 435-672
Organism_scientific: Senecavirus A
Organism_taxid: 390157

Molecule: Capsid Protein Vp4
Chain: D
Fragment: Residues 93-150
Organism_scientific: Senecavirus A
Organism_taxid: 390157
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
C, B


D


E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (6cx1.pdb1.gz) 8174 Kb
  • CSU: Contacts of Structural Units for 6CX1
  • Retrieve 6CX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CX1 from S2C, [Save to disk]
    • View 6CX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CX1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cx1_E] [6cx1_C] [6cx1_B] [6cx1_A] [6cx1_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CX1
  • Community annotation for 6CX1 at PDBWiki (http://pdbwiki.org)

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