6CYR Ligase, Transferase date Apr 06, 2018
title Crystal Structure Of The Ube2a Variant Q93e
authors A.T.Ranzani, J.F.De Oliveira
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 A
Chain: A
Synonym: E2 Ubiquitin-Conjugating Enzyme A,Rad6 Homolog A,H Ubiquitin Carrier Protein A,Ubiquitin-Protein Ligase A;
Ec: 2.3.2.23
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2a, Rad6a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta II(De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.511 52.419 88.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.3.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanistic insights revealed by a UBE2A mutation linked to intellectual disability., de Oliveira JF, do Prado PFV, da Costa SS, Sforca ML, Canateli C, Ranzani AT, Maschietto M, de Oliveira PSL, Otto PA, Klevit RE, Krepischi ACV, Rosenberg C, Franchini KG, Nat Chem Biol. 2019 Jan;15(1):62-70. doi: 10.1038/s41589-018-0177-2. Epub 2018, Dec 10. PMID:30531907
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6cyr.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 6CYR
  • Structure Factors (364 Kb)
  • Retrieve 6CYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CYR from S2C, [Save to disk]
  • View 6CYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CYR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cyr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cyr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CYR
  • Community annotation for 6CYR at PDBWiki (http://pdbwiki.org)

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