6CZ2 Transferase date Apr 07, 2018
title Structure Of The Ptk6 Kinase Domain
authors K.S.Gajiwala, E.Johnson, C.N.Cronin
compound source
Molecule: Protein-Tyrosine Kinase 6
Chain: A
Synonym: Breast Tumor Kinase,Tyrosine-Protein Kinase Brk
Ec: 2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptk6, Brk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: H 3
R_factor 0.203 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.624 108.624 83.996 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand PTR enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSmall molecule inhibitors reveal PTK6 kinase is not an oncogenic driver in breast cancers., Qiu L, Levine K, Gajiwala KS, Cronin CN, Nagata A, Johnson E, Kraus M, Tatlock J, Kania R, Foley T, Sun S, PLoS One. 2018 Jun 7;13(6):e0198374. doi: 10.1371/journal.pone.0198374., eCollection 2018. PMID:29879184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (6cz2.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 6CZ2
  • CSU: Contacts of Structural Units for 6CZ2
  • Structure Factors (114 Kb)
  • Retrieve 6CZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CZ2 from S2C, [Save to disk]
    • View 6CZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CZ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cz2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CZ2
  • Community annotation for 6CZ2 at PDBWiki (http://pdbwiki.org)

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