6CZZ Transferase date Apr 09, 2018
title Crystal Structure Of Arabidopsis Thaliana Phosphoserine Aminotransferase Isoform 1 (Atpsat1) In Complex With Plp- Phosphoserine Geminal Diamine Intermediate
authors B.Sekula, M.Ruszkowski, Z.Dauter
compound source
Molecule: Phosphoserine Aminotransferase 1, Chloroplastic
Chain: A, B, C, D
Synonym: Atpsat1,Phosphohydroxythreonine Aminotransferase
Ec: 2.6.1.52
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Psat1, At4g35630, F8d20.140
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.668 53.288 137.921 90.00 91.91 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand NA, PLP, SEP enzyme Transferase E.C.2.6.1.52 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Analysis of Phosphoserine Aminotransferase (Isoform 1) From Arabidopsis thaliana- the Enzyme Involved in the Phosphorylated Pathway of Serine Biosynthesis., Sekula B, Ruszkowski M, Dauter Z, Front Plant Sci. 2018 Jul 6;9:876. doi: 10.3389/fpls.2018.00876. eCollection, 2018. PMID:30034403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (490 Kb) [Save to disk]
  • Biological Unit Coordinates (6czz.pdb1.gz) 245 Kb
  • Biological Unit Coordinates (6czz.pdb2.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 6CZZ
  • CSU: Contacts of Structural Units for 6CZZ
  • Structure Factors (3015 Kb)
  • Retrieve 6CZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CZZ from S2C, [Save to disk]
  • View 6CZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CZZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6czz_D] [6czz_B] [6czz_C] [6czz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CZZ
  • Community annotation for 6CZZ at PDBWiki (http://pdbwiki.org)

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