6D0L Protein Binding date Apr 10, 2018
title Structure Of Human Tirr
authors G.Cui, M.V.Botuyan, G.Mer
compound source
Molecule: Tudor-Interacting Repair Regulator Protein
Chain: A, B
Synonym: Nudt16-Like Protein 1,Protein Syndesmos
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt16l1, Sdos, Tirr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbb75
symmetry Space Group: P 1
R_factor 0.174 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.890 46.360 48.800 92.31 108.07 105.75
method X-Ray Diffractionresolution 1.97 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nucleotide phosphatase activ...
  • phosphodiesterase decapping ...


  • Primary referenceMechanism of 53BP1 activity regulation by RNA-binding TIRR and a designer protein., Botuyan MV, Cui G, Drane P, Oliveira C, Detappe A, Brault ME, Parnandi N, Chaubey S, Thompson JR, Bragantini B, Zhao D, Chapman JR, Chowdhury D, Mer G, Nat Struct Mol Biol. 2018 Jul 2. pii: 10.1038/s41594-018-0083-z. doi:, 10.1038/s41594-018-0083-z. PMID:29967538
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (6d0l.pdb1.gz) 201 Kb
  • CSU: Contacts of Structural Units for 6D0L
  • Structure Factors (456 Kb)
  • Retrieve 6D0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D0L from S2C, [Save to disk]
  • View 6D0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D0L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6d0l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d0l_B] [6d0l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D0L
  • Community annotation for 6D0L at PDBWiki (http://pdbwiki.org)

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