6D13		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, IOD	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF., Gao A, Vasilyev N, Luciano DJ, Levenson-Palmer R, Richards J, Marsiglia WM, Traaseth NJ, Belasco JG, Serganov A, Nucleic Acids Res. 2018 May 4. pii: 4992646. doi: 10.1093/nar/gky327. PMID:29733359

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk] Biological Unit Coordinates (6d13.pdb1.gz) 290 Kb LPC: Ligand-Protein Contacts for 6D13 CSU: Contacts of Structural Units for 6D13 Structure Factors (348 Kb) Retrieve 6D13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D13 from S2C, [Save to disk]

View 6D13 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d13_A] [6d13_B] SWISS-PROT database:

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