6D1U	Peptide Binding Protein	date	Apr 12, 2018
title	Crystal Structure Of The Human Clr:Ramp1 Extracellular Domai Heterodimer In Complex With Adrenomedullin 2intermedin
authors	A.Pioszak, A.Roehrkasse
compound		source
Molecule: Maltose-Binding Periplasmic Protein,Receptor Acti Modifying Protein 1,Calcitonin Gene-Related Peptide Type 1 Chain: A, B, C Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein,Calcitonin-R Like Receptor Activity-Modifying Protein 1,Crlr Activity-Mo Protein 1,Cgrp Type 1 Receptor,Calcitonin Receptor-Like Rec Engineered: Yes		Organism_scientific: Escherichia Coli O157:H7, Homo Sapiens Organism_common: Human Organism_taxid: 83334, 9606 Gene: Male, Z5632, Ecs5017, Ramp1, Calcrl, Cgrpr Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Adm2 Chain: D, E, F Fragment: Residues 129-147 Synonym: Intermedin Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.194 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 172.295 106.041 136.911 90.00 122.53 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	GLC, NA, NH2	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure-function analyses reveal a triple beta-turn receptor-bound conformation of adrenomedullin 2/intermedin and enable peptide antagonist design., Roehrkasse AM, Booe JM, Lee SM, Warner ML, Pioszak AA, J Biol Chem. 2018 Aug 23. pii: RA118.005062. doi: 10.1074/jbc.RA118.005062. PMID:30139742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk] Biological Unit Coordinates (6d1u.pdb1.gz) 193 Kb Biological Unit Coordinates (6d1u.pdb2.gz) 193 Kb Biological Unit Coordinates (6d1u.pdb3.gz) 198 Kb LPC: Ligand-Protein Contacts for 6D1U CSU: Contacts of Structural Units for 6D1U Structure Factors (3518 Kb) Retrieve 6D1U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D1U from S2C, [Save to disk]

View 6D1U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6D1U

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d1u_E] [6d1u_A] [6d1u_C] [6d1u_B] [6d1u_D] [6d1u_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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