6D3I Oxidoreductase date Apr 16, 2018
title Ftv7 Dioxygenase With 2,4-D Bound
authors T.J.Rydel, C.E.Halls
compound source
Molecule: Ftv7 Dioxygenase
Chain: A, G, D, J
Engineered: Yes
 Organism_scientific: Sphingobium Herbicidovorans
Organism_taxid: 76947
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.927 109.980 116.145 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand AKG, CFA, CO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


Primary referenceDevelopment of Enzymes for Robust Aryloxyphenoxypropionate and Synthetic Auxin Herbicide Tolerance Traits in Maize and Soybean Crops., Larue CT, Goley M, Shi L, Evdokimov AG, Sparks OC, Ellis C, Wollacott AM, Rydel TJ, Halls CE, Van Scoyoc B, Fu X, Nageotte JR, Adio AM, Zheng M, Sturman EJ, Garvey GS, Varagona MJ, Pest Manag Sci. 2019 Mar 3. doi: 10.1002/ps.5393. PMID:30828945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (6d3i.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 6D3I
  • CSU: Contacts of Structural Units for 6D3I
  • Structure Factors (630 Kb)
  • Retrieve 6D3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D3I from S2C, [Save to disk]
    • View 6D3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D3I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d3i_D] [6d3i_A] [6d3i_J] [6d3i_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D3I
  • Community annotation for 6D3I at PDBWiki (http://pdbwiki.org)

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