6D6L Signaling Protein Agonist date Apr 21, 2018
title The Structure Of Ligand Binding Domain Of Lasr In Complex Wi Homolog, Compound 14
authors S.H.Dong, S.K.Nair
compound source
Molecule: Transcriptional Activator Protein Lasr
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1;
Gene: Lasr, Pa1430
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.120 84.550 76.990 90.00 101.09 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand FY4 enzyme
Primary referenceStructural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR., O'Reilly MC, Dong SH, Rossi FM, Karlen KM, Kumar RS, Nair SK, Blackwell HE, Cell Chem Biol. 2018 Jul 11. pii: S2451-9456(18)30221-6. doi:, 10.1016/j.chembiol.2018.06.007. PMID:30033130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (6d6l.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (6d6l.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 6D6L
  • CSU: Contacts of Structural Units for 6D6L
  • Structure Factors (706 Kb)
  • Retrieve 6D6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D6L from S2C, [Save to disk]
    • View 6D6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D6L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d6l_A] [6d6l_D] [6d6l_B] [6d6l_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D6L
  • Community annotation for 6D6L at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science