6D7L Transport Protein date Apr 25, 2018
title Cytoplasmic Domain Of Trpc3
authors F.J.Sierra-Valdez, C.M.Azumaya, T.Nakagawa, J.F.Cordero-Morales
compound source
Molecule: Short Transient Receptor Potential Channel 3
Chain: A, B, C, D
Synonym: Trpc3,Transient Receptor Protein 3,Htrp3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trpc3, Trp3
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure-function analyses of the ion channel TRPC3 reveal that its cytoplasmic domain allosterically modulates channel gating., Sierra-Valdez F, Azumaya CM, Romero LO, Nakagawa T, Cordero-Morales JF, J Biol Chem. 2018 Aug 23. pii: RA118.005066. doi: 10.1074/jbc.RA118.005066. PMID:30139744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (6d7l.pdb1.gz) 163 Kb
  • CSU: Contacts of Structural Units for 6D7L
  • Retrieve 6D7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D7L from S2C, [Save to disk]
  • View 6D7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D7L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d7l_B] [6d7l_D] [6d7l_A] [6d7l_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D7L
  • Community annotation for 6D7L at PDBWiki (http://pdbwiki.org)

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