6DB9		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Primary reference	Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif., Shelke SA, Shao Y, Laski A, Koirala D, Weissman BP, Fuller JR, Tan X, Constantin TP, Waggoner AS, Bruchez MP, Armitage BA, Piccirilli JA, Nat Commun. 2018 Oct 31;9(1):4542. doi: 10.1038/s41467-018-06942-3. PMID:30382099

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (6db9.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 6DB9 CSU: Contacts of Structural Units for 6DB9 Structure Factors (356 Kb) Retrieve 6DB9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DB9 from S2C, [Save to disk]

View 6DB9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6db9_H] [6db9_L] [6db9_R] SWISS-PROT database:

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