6DBO	Recombination Dna	date	May 03, 2018
title	Cryo-Em Structure Of Rag In Complex With 12-Rss And 23-Rss S Dnas
authors	H.Wu, M.Liao, H.Ru, W.Mi
compound		source
Molecule: Recombination Activating Gene 1 - Mbp Chimera Chain: A, C Synonym: Rag-1 Ec: 2.3.2.27 Engineered: Yes		Organism_scientific: Escherichia Coli, Danio Rerio Organism_common: Zebrafish Organism_taxid: 83333, 7955 Strain: K12 Gene: Male, B4034, Jw3994, Rag1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Recombination Activating Gene 2 Chain: B, D Synonym: V(D)J Recombination-Activating Protein 2 Engineered: Yes		Organism_scientific: Danio Rerio Organism_common: Zebrafish Organism_taxid: 7955 Gene: Rag2 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Forward Strand Of Substrate Rss Dna Chain: E, G Engineered: Yes		Synthetic: Yes Organism_scientific: Danio Rerio Organism_taxid: 7955
Molecule: Reverse Strand Of Substrate Rss Dna Chain: F, H Engineered: Yes		Synthetic: Yes Organism_scientific: Danio Rerio Organism_taxid: 7955
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.45 Å
ligand	CA, ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Gene Ontology	Chain Function Process Component A, C carbohydrate transmembrane t... D, B
Primary reference	DNA melting initiates the RAG catalytic pathway., Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H, Nat Struct Mol Biol. 2018 Aug;25(8):732-742. doi: 10.1038/s41594-018-0098-5. Epub, 2018 Jul 30. PMID:30061602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk] Biological Unit Coordinates (6dbo.pdb1.gz) 347 Kb LPC: Ligand-Protein Contacts for 6DBO CSU: Contacts of Structural Units for 6DBO Retrieve 6DBO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DBO from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dbo_D] [6dbo_G] [6dbo_H] [6dbo_F] [6dbo_A] [6dbo_B] [6dbo_E] [6dbo_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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