6DBV	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs	date
authors	Wu, H., Liao, M., Ru, H., Mi, W.
compound		source
symmetry		R_factor R_Free 0.4331
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	4.29
ligand	CA, ZN	enzyme
Gene Ontology	Chain Function Process Component A, C carbohydrate transmembrane t... D, B
Primary reference	DNA melting initiates the RAG catalytic pathway., Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H, Nat Struct Mol Biol. 2018 Aug;25(8):732-742. doi: 10.1038/s41594-018-0098-5. Epub, 2018 Jul 30. PMID:30061602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (422 Kb) [Save to disk] Biological Unit Coordinates (6dbv.pdb1.gz) 408 Kb LPC: Ligand-Protein Contacts for 6DBV CSU: Contacts of Structural Units for 6DBV Retrieve 6DBV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DBV from S2C, [Save to disk]

View 6DBV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DBV

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6dbv from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dbv_D] [6dbv_H] [6dbv_E] [6dbv_G] [6dbv_A] [6dbv_C] [6dbv_B] [6dbv_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DBV

Community annotation for 6DBV at PDBWiki (http://pdbwiki.org)

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