6DCE Structural Protein date May 05, 2018
title X-Ray Structure Of Fip200 Claw Domain
authors M.Y.Su, J.H.Hurley
compound source
Molecule: Rb1-Inducible Coiled-Coil Protein 1
Chain: A
Synonym: Fak Family Kinase-Interacting Protein Of 200 Kda,F
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rb1cc1, Kiaa0203, Rbicc
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.779 89.220 80.098 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates., Turco E, Witt M, Abert C, Bock-Bierbaum T, Su MY, Trapannone R, Sztacho M, Danieli A, Shi X, Zaffagnini G, Gamper A, Schuschnig M, Fracchiolla D, Bernklau D, Romanov J, Hartl M, Hurley JH, Daumke O, Martens S, Mol Cell. 2019 Feb 26. pii: S1097-2765(19)30055-3. doi:, 10.1016/j.molcel.2019.01.035. PMID:30853400
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (6dce.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 6DCE
  • Structure Factors (366 Kb)
  • Retrieve 6DCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DCE from S2C, [Save to disk]
  • View 6DCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dce_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DCE
  • Community annotation for 6DCE at PDBWiki (http://pdbwiki.org)

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