6DCQ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, FUC, GAL, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A, C, E B, D, F
Primary reference	Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design., Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB, Cell Rep. 2018 Jun 12;23(11):3249-3261. doi: 10.1016/j.celrep.2018.05.046. PMID:29898396

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (366 Kb) [Save to disk] Biological Unit Coordinates (6dcq.pdb1.gz) 345 Kb LPC: Ligand-Protein Contacts for 6DCQ CSU: Contacts of Structural Units for 6DCQ Retrieve 6DCQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DCQ from S2C, [Save to disk]

View 6DCQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dcq_A] [6dcq_B] [6dcq_C] [6dcq_D] [6dcq_E] [6dcq_F] [6dcq_H] [6dcq_L] [6dcq_M] [6dcq_N] SWISS-PROT database:

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