6DEE Endocytosis date May 11, 2018
title Crystal Structure Of The C-Terminus Of Homo Sapiens Spin90 ( Protein Interacting With Nck), Residues 306-722
authors B.J.Nolen, Q.Luan
compound source
Molecule: Nck-Interacting Protein With Sh3 Domain
Chain: A
Fragment: Unp Residues 306-722
Synonym: 54 Kda Vaca-Interacting Protein, 54 Kda Vimentin-I Protein, Vip54, 90 Kda Sh3 Protein Interacting With Nck, Af Interacting Protein 1, Dip-1, Diaphanous Protein-Interactin Sh3 Adapter Protein Spin90, Wasp-Interacting Sh3-Domain Pro Wish, Wiskott-Aldrich Syndrome Protein-Interacting Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nckipsd, Af3p21, Spin90
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgv67
symmetry Space Group: P 41 21 2
R_factor 0.259 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.504 98.504 81.812 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.04 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (6dee.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 6DEE
  • Structure Factors (169 Kb)
  • Retrieve 6DEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DEE from S2C, [Save to disk]
  • View 6DEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DEE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dee_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DEE
  • Community annotation for 6DEE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science