6DF3 Cytokine date May 14, 2018
title Crystal Structure Of Ternary Complex Of Il-24 With Soluble R Il-22ra And Il-20rb
authors J.Lubkowski, A.Wlodawer
compound source
Molecule: Interleukin-22 Receptor Subunit Alpha-1
Chain: L
Fragment: Unp Residues 24-228
Synonym: Il-22ra1, Cytokine Receptor Class-II Member 9, Cyt Receptor Family 2 Member 9, Crf2-9, Zcytor11;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il22ra1, Il22r
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Interleukin-24
Chain: C
Fragment: Unp Residues 52-206
Synonym: Il-24, Melanoma Differentiation-Associated Gene 7 Mda-7, Suppression Of Tumorigenicity 16 Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il24, Mda7, St16
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Interleukin-20 Receptor Subunit Beta
Chain: H
Fragment: Unp Residues 35-224
Synonym: Il-20rb, Fibronectin Type III Domain Containing 6, Il-20r2;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il20rb, Dirs1, Unq557pro1114
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
symmetry Space Group: P 43
R_factor 0.182 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.702 77.702 124.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceCrystal Structure of the Labile Complex of IL-24 with the Extracellular Domains of IL-22R1 and IL-20R2., Lubkowski J, Sonmez C, Smirnov SV, Anishkin A, Kotenko SV, Wlodawer A, J Immunol. 2018 Aug 15. pii: jimmunol.1800726. doi: 10.4049/jimmunol.1800726. PMID:30111632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (6df3.pdb1.gz) 189 Kb
  • CSU: Contacts of Structural Units for 6DF3
  • Structure Factors (1109 Kb)
  • Retrieve 6DF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DF3 from S2C, [Save to disk]
  • View 6DF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DF3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6df3, region F:320-679 [Jmol] [rasmolscript] [script source]
  • Fold representative 6df3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6df3_L] [6df3_H] [6df3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DF3
  • Community annotation for 6DF3 at PDBWiki (http://pdbwiki.org)

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