6DGM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1GP, CA, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceDiscovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides., Edgar RJ, van Hensbergen VP, Ruda A, Turner AG, Deng P, Le Breton Y, El-Sayed NM, Belew AT, McIver KS, McEwan AG, Morris AJ, Lambeau G, Walker MJ, Rush JS, Korotkov KV, Widmalm G, van Sorge NM, Korotkova N, Nat Chem Biol. 2019 Apr 1. pii: 10.1038/s41589-019-0251-4. doi:, 10.1038/s41589-019-0251-4. PMID:30936502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (6dgm.pdb1.gz) 188 Kb
  • Biological Unit Coordinates (6dgm.pdb2.gz) 185 Kb
  • Biological Unit Coordinates (6dgm.pdb3.gz) 369 Kb
  • LPC: Ligand-Protein Contacts for 6DGM
  • CSU: Contacts of Structural Units for 6DGM
  • Structure Factors (3124 Kb)
  • Retrieve 6DGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DGM from S2C, [Save to disk]
  • View 6DGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dgm_A] [6dgm_B]
  • SWISS-PROT database:

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