6DJW	Transferase	date	May 26, 2018
title	Crystal Structure Of Pparkin (Rep And Ring2 Deleted)-Pub-Ubc
authors	V.Sauve, G.Sung, J.F.Trempe, K.Gehring
compound		source
Molecule: Rbr-Type E3 Ubiquitin Transferase,Rbr-Type E3 Ubi Transferase; Chain: A Fragment: Unp Residues 29-116,161-412 Synonym: Parkin Ec: 2.3.2.31 Engineered: Yes		Organism_scientific: Bactrocera Dorsalis Organism_common: Oriental Fruit Fly Organism_taxid: 27457 Gene: Prkn2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p1
Molecule: Ubiquitin Chain: B		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
Molecule: Ubiquitin-Conjugating Enzyme E2 L3 Chain: C Synonym: E2 Ubiquitin-Conjugating Enzyme L3, L-Ubc, Ubch7, Carrier Protein L3, Ubiquitin-Conjugating Enzyme E2-F1, Ubi Protein Ligase L3; Ec: 2.3.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2l3, Ubce7, Ubch7 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p1
symmetry	Space Group: P 31 2 1	R_factor 0.263 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.606 134.606 86.193 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.80 Å
ligand	SEP, ZN	enzyme	Transferase E.C.2.3.2.31 BRENDA
Gene Ontology	Chain Function Process Component A C transcription coactivator ac...
Primary reference	Mechanism of parkin activation by phosphorylation., Sauve V, Sung G, Soya N, Kozlov G, Blaimschein N, Miotto LS, Trempe JF, Lukacs GL, Gehring K, Nat Struct Mol Biol. 2018 Jul;25(7):623-630. doi: 10.1038/s41594-018-0088-7. Epub, 2018 Jul 2. PMID:29967542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk] Biological Unit Coordinates (6djw.pdb1.gz) 188 Kb LPC: Ligand-Protein Contacts for 6DJW CSU: Contacts of Structural Units for 6DJW Structure Factors (244 Kb) Retrieve 6DJW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DJW from S2C, [Save to disk]

View 6DJW in 3D

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Visual 3D analysis of 6DJW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6djw_C] [6djw_A] [6djw_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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