6DKJ	Signaling Protein	date	May 29, 2018
title	Human Gipr Ecd And Fab Complex
authors	X.Min, Z.Wang
compound		source
Molecule: Fab Heavy Chain Chain: H, A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Fab Light Chain Chain: L, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hel-213 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Gastric Inhibitory Polypeptide Receptor Chain: C, D Fragment: Residues 22-138 Synonym: Gip-R,Glucose-Dependent Insulinotropic Polypeptide Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gipr Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
symmetry	Space Group: P 1 21 1	R_factor 0.199 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.907 63.649 159.099 90.00 92.56 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	EDO	enzyme
Gene Ontology	Chain Function Process Component D, C
Primary reference	Anti-obesity effects of GIPR antagonists alone and in combination with GLP-1R agonists in preclinical models., Killion EA, Wang J, Yie J, Shi SD, Bates D, Min X, Komorowski R, Hager T, Deng L, Atangan L, Lu SC, Kurzeja RJM, Sivits G, Lin J, Chen Q, Wang Z, Thibault SA, Abbott CM, Meng T, Clavette B, Murawsky CM, Foltz IN, Rottman JB, Hale C, Veniant MM, Lloyd DJ, Sci Transl Med. 2018 Dec 19;10(472). pii: 10/472/eaat3392. doi:, 10.1126/scitranslmed.aat3392. PMID:30567927

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (6dkj.pdb1.gz) 96 Kb Biological Unit Coordinates (6dkj.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 6DKJ CSU: Contacts of Structural Units for 6DKJ Structure Factors (2202 Kb) Retrieve 6DKJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DKJ from S2C, [Save to disk]

View 6DKJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DKJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dkj_H] [6dkj_D] [6dkj_L] [6dkj_A] [6dkj_C] [6dkj_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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