6DKS Transcription Dna date May 30, 2018
title Structure Of The Rbpj-Sharp-Dna Repressor Complex
authors R.A.Kovall, B.D.Vanderwielen, Z.Yuan
compound source
Molecule: Dna (5'-D(Apaptpcptptptpcpcpcpapcpap 3');
Chain: A, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Dna (5'-D(Tptpapcptpgptpgpgpgpapapap 3');
Chain: B, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Recombining Binding Protein Suppressor Of Hairles
Chain: C, G
Fragment: Residues 53-474
Synonym: J Kappa-Recombination Signal-Binding Protein,Rbp-J
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rbpj, Igkjrb1, Igkrsbp, Rbpsuh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Maltosemaltodextrin-Binding Periplasmic Protein
Chain: D, H
Fragment: Residues 28-392
Synonym: Mmbp,Maltodextrin-Binding Protein,Maltose-Binding Mbp;
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Male, Z5632, Ecs5017
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.450 231.570 90.260 90.00 99.88 90.00
method X-Ray Diffractionresolution 2.78 Å
ligand GLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, G


H, D
  • carbohydrate transmembrane t...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk]
  • Biological Unit Coordinates (6dks.pdb1.gz) 562 Kb
  • Biological Unit Coordinates (6dks.pdb2.gz) 284 Kb
  • Biological Unit Coordinates (6dks.pdb3.gz) 284 Kb
  • LPC: Ligand-Protein Contacts for 6DKS
  • CSU: Contacts of Structural Units for 6DKS
  • Structure Factors (1879 Kb)
  • Retrieve 6DKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DKS from S2C, [Save to disk]
  • View 6DKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DKS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dks from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dks_A] [6dks_E] [6dks_G] [6dks_F] [6dks_B] [6dks_H] [6dks_D] [6dks_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DKS
  • Community annotation for 6DKS at PDBWiki (http://pdbwiki.org)

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