6DLW Immune System date Jun 03, 2018
title Complement Component Polyc9
authors M.A.Dunstone, B.A.Spicer, R.H.P.Law
compound source
Molecule: Complement Component C9
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C9
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceThe first transmembrane region of complement component-9 acts as a brake on its self-assembly., Spicer BA, Law RHP, Caradoc-Davies TT, Ekkel SM, Bayly-Jones C, Pang SS, Conroy PJ, Ramm G, Radjainia M, Venugopal H, Whisstock JC, Dunstone MA, Nat Commun. 2018 Aug 15;9(1):3266. doi: 10.1038/s41467-018-05717-0. PMID:30111885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1449 Kb) [Save to disk]
  • Biological Unit Coordinates (6dlw.pdb1.gz) 1432 Kb
  • LPC: Ligand-Protein Contacts for 6DLW
  • CSU: Contacts of Structural Units for 6DLW
  • Retrieve 6DLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DLW from S2C, [Save to disk]
    • View 6DLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DLW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dlw_L] [6dlw_D] [6dlw_U] [6dlw_S] [6dlw_G] [6dlw_C] [6dlw_K] [6dlw_Q] [6dlw_F] [6dlw_M] [6dlw_N] [6dlw_R] [6dlw_I] [6dlw_B] [6dlw_J] [6dlw_E] [6dlw_P] [6dlw_H] [6dlw_A] [6dlw_O] [6dlw_T] [6dlw_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DLW
  • Community annotation for 6DLW at PDBWiki (http://pdbwiki.org)

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