6DN6 Immune System Inhibitor date Jun 06, 2018
title Spry Domain-Containing Socs Box Protein 2 Complexed With Inn Cyclic Peptide Inhibitor
authors R.H.P.Law, T.T.Caradoc-Davies, R.S.Norton
compound source
Molecule: Spry Domain-Containing Socs Box Protein 2
Chain: A
Synonym: Ssb-2,Gene-Rich Cluster Protein C9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spsb2, Grcc9, Ssb2
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K12

Molecule: Innn(Abu) Cyclic Peptide Inhibitor
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.040 61.950 84.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand ABU enzyme
Primary referenceA Cyclic Peptide Inhibitor of the iNOS-SPSB Protein-Protein Interaction as a Potential Anti-Infective Agent., Sadek MM, Barlow N, Leung EWW, Williams-Noonan BJ, Yap BK, Shariff FM, Caradoc-Davies TT, Nicholson SE, Chalmers DK, Thompson PE, Law RHP, Norton RS, ACS Chem Biol. 2018 Oct 19;13(10):2930-2938. doi: 10.1021/acschembio.8b00561., Epub 2018 Sep 18. PMID:30226743
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (6dn6.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 6DN6
  • CSU: Contacts of Structural Units for 6DN6
  • Structure Factors (991 Kb)
  • Retrieve 6DN6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DN6 from S2C, [Save to disk]
  • View 6DN6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DN6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dn6_A] [6dn6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DN6
  • Community annotation for 6DN6 at PDBWiki (http://pdbwiki.org)

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