6DND Transferase date Jun 06, 2018
title Crystal Structure Of Wild-Type (Wt) Human Glutamate Oxaloace Transaminase 1 (Got1)
authors Z.Assar, M.C.Holt, A.J.Stein, L.Lairson, C.A.Lyssiotis
compound source
Molecule: Aspartate Aminotransferase, Cytoplasmic
Chain: A, B
Synonym: Caspat,Cysteine Aminotransferase,Cytoplasmic,Cyste Transaminase,Ccat,Glutamate Oxaloacetate Transaminase 1,Tra A;
Ec: 2.6.1.1,2.6.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Got1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.036 96.863 97.871 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand PG4, PLP enzyme Transferase E.C.2.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors., Holt MC, Assar Z, Beheshti Zavareh R, Lin L, Anglin J, Mashadova O, Haldar D, Mullarky E, Kremer DM, Cantley LC, Kimmelman AC, Stein AJ, Lairson LL, Lyssiotis CA, Biochemistry. 2018 Nov 12. doi: 10.1021/acs.biochem.8b00914. PMID:30365304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (6dnd.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (6dnd.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 6DND
  • CSU: Contacts of Structural Units for 6DND
  • Structure Factors (1407 Kb)
  • Retrieve 6DND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DND from S2C, [Save to disk]
  • View 6DND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DND
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dnd_A] [6dnd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DND
  • Community annotation for 6DND at PDBWiki (http://pdbwiki.org)

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