6DRX Membrane Protein date Jun 13, 2018
title Structural Determinants Of Activation And Biased Agonism At Receptor
authors J.D.Mccorvy, D.Wacker, S.Wang, B.Agegnehu, J.Liu, K.Lansu, A.R.Tri R.H.J.Olsen, T.Che, J.Jin, B.L.Roth
compound source
Molecule: 5ht2b Receptor, Bril Chimera
Chain: A
Synonym: 5-Ht2b,Serotonin Receptor 2b,Cytochrome B-562
Engineered: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Htr2b, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 2 2 21
R_factor 0.243 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.380 118.550 168.203 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand CLR, H8G, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants of 5-HT2B receptor activation and biased agonism., McCorvy JD, Wacker D, Wang S, Agegnehu B, Liu J, Lansu K, Tribo AR, Olsen RHJ, Che T, Jin J, Roth BL, Nat Struct Mol Biol. 2018 Aug 20. pii: 10.1038/s41594-018-0116-7. doi:, 10.1038/s41594-018-0116-7. PMID:30127358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (6drx.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 6DRX
  • CSU: Contacts of Structural Units for 6DRX
  • Structure Factors (156 Kb)
  • Retrieve 6DRX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DRX from S2C, [Save to disk]
  • View 6DRX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DRX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6drx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DRX
  • Community annotation for 6DRX at PDBWiki (http://pdbwiki.org)

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