6DSV	Transferase Dna	date	Jun 14, 2018
title	Bst Dna Polymerase I Post-Chemistry (N+2) Structure
authors	N.Chim, L.N.Jackson, J.C.Chaput
compound		source
Molecule: Dna (5'-D(Gpcpgpaptpcpapcpgptpa)-3') Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Polymerase I Chain: A Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Gene: Pola Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Ptpapcpgptpgpaptpcpgpcpa)-3 Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.082 93.069 104.736 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	MG, SO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A DNA-directed DNA polymerase ... 3'-5' exonuclease activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk] Biological Unit Coordinates (6dsv.pdb1.gz) 219 Kb LPC: Ligand-Protein Contacts for 6DSV CSU: Contacts of Structural Units for 6DSV Structure Factors (582 Kb) Retrieve 6DSV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DSV from S2C, [Save to disk]

View 6DSV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DSV

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6dsv from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dsv_T] [6dsv_P] [6dsv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DSV

Community annotation for 6DSV at PDBWiki (http://pdbwiki.org)

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