6DU3 Hydrolase Peptide date Jun 19, 2018
title Structure Of Scp1 D96n Bound To Rest-Ps8614 Peptide
authors N.T.Burkholder, J.E.Mayfield, X.Yu, S.Irani, D.K.Arce, F.Jiang, W. Y.Xue, Y.J.Zhang
compound source
Molecule: Carboxy-Terminal Domain Rna Polymerase II Polypep Small Phosphatase 1;
Chain: A, B
Synonym: Nuclear Lim Interactor-Interacting Factor 3,Nli-In Factor 3,Small C-Terminal Domain Phosphatase 1,Small Ctd Ph 1;
Ec: 3.1.3.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctdsp1, Nif3, Nliif, Scp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Rest-Ps861
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.414 78.731 63.001 90.00 112.42 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand
enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePhosphatase activity of Small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST)., Burkholder NT, Mayfield JE, Yu X, Irani S, Arce DK, Jiang F, Matthews W, Xue Y, Zhang YJ, J Biol Chem. 2018 Sep 14. pii: RA118.004722. doi: 10.1074/jbc.RA118.004722. PMID:30217818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (6du3.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (6du3.pdb2.gz) 32 Kb
  • CSU: Contacts of Structural Units for 6DU3
  • Structure Factors (464 Kb)
  • Retrieve 6DU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DU3 from S2C, [Save to disk]
  • View 6DU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DU3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6du3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6du3_B] [6du3_A] [6du3_D] [6du3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DU3
  • Community annotation for 6DU3 at PDBWiki (http://pdbwiki.org)

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