6DU5	Transferase Rna	date	Jun 19, 2018
title	Crystal Structure Of Hmettl16 Catalytic Domain In Complex Wi 3'Utr Hairpin 6
authors	K.Doxtader, P.Wang, Y.Nam
compound		source
Molecule: U6 Small Nuclear Rna (Adenine-(43)-N(6))-Methyltr Chain: A Synonym: Methyltransferase 10 Domain-Containing Protein, Methyltransferase-Like Protein 16,N6-Adenosine-Methyltransf Mettl16; Ec: 2.1.1.346,2.1.1.62 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mettl16, Mett10d Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hp6-Rna (25-Mer) Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 41 21 2	R_factor 0.248 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.918 134.918 76.208 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.01 Å
ligand	MSE	enzyme	Transferase E.C.2.1.1.346 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor., Doxtader KA, Wang P, Scarborough AM, Seo D, Conrad NK, Nam Y, Mol Cell. 2018 Sep 20;71(6):1001-1011.e4. doi: 10.1016/j.molcel.2018.07.025. Epub, 2018 Sep 6. PMID:30197297

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (6du5.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 6DU5 CSU: Contacts of Structural Units for 6DU5 Structure Factors (147 Kb) Retrieve 6DU5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DU5 from S2C, [Save to disk]

View 6DU5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DU5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6du5_B] [6du5_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DU5

Community annotation for 6DU5 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---