6DV2 Transferase Oxidoreductase date Jun 22, 2018
title Crystal Structure Of Human Mitochondrial Trifunctional Prote
authors Z.Fu, C.Xia, K.P.Battaile, J.P.Kim
compound source
Molecule: Trifunctional Enzyme Subunit Beta, Mitochondrial
Chain: A, B, C, D, E, F
Fragment: Residues 34-474
Synonym: Tp-Beta
Ec: 2.3.1.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hadhb, Mstp029
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
Expression_system_plasmid: Htfpb_pet28

Molecule: Trifunctional Enzyme Subunit Alpha, Mitochondrial
Chain: G, H, I, J, K, L
Synonym: 78 Kda Gastrin-Binding Protein,Tp-Alpha
Ec: 4.2.1.17,1.1.1.211
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hadha, Hadh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21
Expression_system_plasmid: Htfpa_pet21
symmetry Space Group: P 1 21 1
R_factor 0.244 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.536 237.938 141.319 90.00 105.61 90.00
method X-Ray Diffractionresolution 3.60 Å
ligand
enzyme Transferase E.C.2.3.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceCrystal structure of human mitochondrial trifunctional protein, a fatty acid beta-oxidation metabolon., Xia C, Fu Z, Battaile KP, Kim JP, Proc Natl Acad Sci U S A. 2019 Mar 8. pii: 1816317116. doi:, 10.1073/pnas.1816317116. PMID:30850536
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1051 Kb) [Save to disk]
  • Biological Unit Coordinates (6dv2.pdb1.gz) 359 Kb
  • Biological Unit Coordinates (6dv2.pdb2.gz) 355 Kb
  • Biological Unit Coordinates (6dv2.pdb3.gz) 353 Kb
  • CSU: Contacts of Structural Units for 6DV2
  • Structure Factors (1056 Kb)
  • Retrieve 6DV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DV2 from S2C, [Save to disk]
  • View 6DV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dv2_J] [6dv2_C] [6dv2_K] [6dv2_F] [6dv2_I] [6dv2_E] [6dv2_H] [6dv2_D] [6dv2_A] [6dv2_B] [6dv2_G] [6dv2_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DV2
  • Community annotation for 6DV2 at PDBWiki (http://pdbwiki.org)

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