6DVU Lipid Transport date Jun 25, 2018
title Structure Of The Monoclinic-1 (Monocl-1) Crystal Form Of Hum Apolipoprotein C1
authors A.Mcpherson, S.B.Larson
compound source
Molecule: Apolipoprotein C-I
Chain: A, B
Synonym: Apoc-I,Apolipoprotein C1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.541 46.739 33.880 90.00 95.16 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Structure of Human Apolipoprotein C-1 in Four Different Crystal Forms., McPherson A, Larson SB, J Lipid Res. 2018 Dec 17. pii: jlr.M089441. doi: 10.1194/jlr.M089441. PMID:30559175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (6dvu.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 6DVU
  • Structure Factors (217 Kb)
  • Retrieve 6DVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DVU from S2C, [Save to disk]
  • View 6DVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dvu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dvu_B] [6dvu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DVU
  • Community annotation for 6DVU at PDBWiki (http://pdbwiki.org)

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