6DWW Dna Binding Protein Dna date Jun 28, 2018
title Hermes Transposase Deletion Dimer Complex With (At) Dna And
authors F.Dyda, A.R.Voth, A.B.Hickman
compound source
Molecule: Hermes Transposase
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Musca Domestica
Organism_common: House Fly
Organism_taxid: 7370
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosettablue(De3)
Expression_system_vector_type: Pet-15b

Molecule: Dna (5'-D(Apgpapgpapapcpapapcpapapcp 3');
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370

Molecule: Dna (25-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370

Molecule: Dna (5'-D(Gpcpgptpgpapa)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370
symmetry Space Group: C 2 2 21
R_factor 0.199 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.480 136.460 104.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (6dww.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 6DWW
  • CSU: Contacts of Structural Units for 6DWW
  • Structure Factors (171 Kb)
  • Retrieve 6DWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DWW from S2C, [Save to disk]
  • View 6DWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DWW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dww from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dww_A] [6dww_B] [6dww_D] [6dww_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DWW
  • Community annotation for 6DWW at PDBWiki (http://pdbwiki.org)

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