6DWZ Dna Binding Protein Dna date Jun 28, 2018
title Hermes Transposase Deletion Dimer Complex With (Cg) Dna
authors F.Dyda, A.B.Hickman
compound source
Molecule: Hermes Transposase
Chain: A, E
Engineered: Yes
Mutation: Yes
Organism_scientific: Musca Domestica
Organism_common: House Fly
Organism_taxid: 7370
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpapgpapapcpapapcpapapcpap 3');
Chain: B, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370

Molecule: Dna (26-Mer)
Chain: C, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370

Molecule: Dna (5'-D(Gpcpgptpgpapc)-3')
Chain: D, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Musca Domestica
Organism_taxid: 7370
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.380 121.110 132.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (6dwz.pdb1.gz) 195 Kb
  • CSU: Contacts of Structural Units for 6DWZ
  • Structure Factors (284 Kb)
  • Retrieve 6DWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DWZ from S2C, [Save to disk]
  • View 6DWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DWZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dwz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dwz_C] [6dwz_H] [6dwz_E] [6dwz_B] [6dwz_D] [6dwz_G] [6dwz_A] [6dwz_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DWZ
  • Community annotation for 6DWZ at PDBWiki (http://pdbwiki.org)

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