6DXW Hydrolase date Jul 01, 2018
title Human N-Acylethanolamine-Hydrolyzing Acid Amidase (Naaa) Pre (C126a)
authors A.Gorelik, A.Gebai, K.Illes, D.Piomelli, B.Nagar
compound source
Molecule: N-Acylethanolamine-Hydrolyzing Acid Amidase
Chain: A, B, C, D
Synonym: Acid Ceramidase-Like Protein,N-Acylsphingosine Amidohydrolase-Like,Asah-Like Protein;
Ec: 3.5.1.60
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Naaa, Asahl, Plt
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.909 140.011 90.123 90.00 115.20 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, FUC, NAG enzyme Hydrolase E.C.3.5.1.60 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • neurotransmitter secretion

  • Primary referenceMolecular mechanism of activation of the immunoregulatory amidase NAAA., Gorelik A, Gebai A, Illes K, Piomelli D, Nagar B, Proc Natl Acad Sci U S A. 2018 Oct 9. pii: 1811759115. doi:, 10.1073/pnas.1811759115. PMID:30301806
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (658 Kb) [Save to disk]
  • Biological Unit Coordinates (6dxw.pdb1.gz) 164 Kb
  • Biological Unit Coordinates (6dxw.pdb2.gz) 164 Kb
  • Biological Unit Coordinates (6dxw.pdb3.gz) 167 Kb
  • Biological Unit Coordinates (6dxw.pdb4.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 6DXW
  • CSU: Contacts of Structural Units for 6DXW
  • Structure Factors (629 Kb)
  • Retrieve 6DXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DXW from S2C, [Save to disk]
  • View 6DXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dxw_C] [6dxw_D] [6dxw_B] [6dxw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DXW
  • Community annotation for 6DXW at PDBWiki (http://pdbwiki.org)

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