6E08 Oxidoreductase date Jul 06, 2018
title Crystal Structure Of G6pd In Complex With Structural Nadp
authors S.Rahighi, D.Mochly Rosen, S.Wakatsuki
compound source
Molecule: Glucose-6-Phosphate 1-Dehydrogenase
Chain: L
Synonym: G6pd
Ec: 1.1.1.49
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: G6pd
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: F 2 2 2
R_factor 0.172 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.580 173.410 215.909 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceCorrecting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator., Hwang S, Mruk K, Rahighi S, Raub AG, Chen CH, Dorn LE, Horikoshi N, Wakatsuki S, Chen JK, Mochly-Rosen D, Nat Commun. 2018 Oct 2;9(1):4045. doi: 10.1038/s41467-018-06447-z. PMID:30279493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (6e08.pdb1.gz) 179 Kb
  • CSU: Contacts of Structural Units for 6E08
  • Structure Factors (1321 Kb)
  • Retrieve 6E08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E08 from S2C, [Save to disk]
  • View 6E08 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E08
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e08 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e08_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E08
  • Community annotation for 6E08 at PDBWiki (http://pdbwiki.org)

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