6E0C	Nuclear Protein	date	Jul 06, 2018
title	Cryo-Em Structure Of The Cenp-A Nucleosome (W601) In Complex Single Chain Antibody Fragment
authors	K.N.S.Yadav, B.R.Zhou
compound		source
Molecule: Histone H3-Like Centromeric Protein A Chain: A, E Synonym: Centromere Autoantigen A,Centromere Protein A,Cenp Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cenpa Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2a Type 1-Be Chain: C, G Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (146-Mer) Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Dna (146-Mer) Chain: J Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Scfv Chain: M, N Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	2.63 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment., Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P, Nat Commun. 2019 May 24;10(1):2301. doi: 10.1038/s41467-019-10247-4. PMID:31127102

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk] Biological Unit Coordinates (6e0c.pdb1.gz) 278 Kb CSU: Contacts of Structural Units for 6E0C Retrieve 6E0C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6E0C from S2C, [Save to disk]

View 6E0C in 3D

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Visual 3D analysis of 6E0C

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6e0c_H] [6e0c_N] [6e0c_M] [6e0c_G] [6e0c_D] [6e0c_F] [6e0c_J] [6e0c_A] [6e0c_C] [6e0c_I] [6e0c_B] [6e0c_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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