6E1H Membrane Protein date Jul 09, 2018
title Structure Of 2:1 Human Ptch1-Shh-N Complex
authors X.Qi, X.Li
compound source
Molecule: Protein Patched Homolog 1
Chain: A, B
Synonym: Ptc1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptch1, Ptch
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Sonic Hedgehog Protein N-Product
Chain: C
Synonym: Shh,Hhg-1,Sonic Hedgehog Protein,Shhnc
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shh
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Primary referenceTwo Patched molecules engage distinct sites on Hedgehog yielding a signaling-competent complex., Qi X, Schmiege P, Coutavas E, Li X, Science. 2018 Aug 23. pii: science.aas8843. doi: 10.1126/science.aas8843. PMID:30139912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (6e1h.pdb1.gz) 301 Kb
  • CSU: Contacts of Structural Units for 6E1H
  • Retrieve 6E1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E1H from S2C, [Save to disk]
  • View 6E1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E1H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e1h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e1h_C] [6e1h_B] [6e1h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E1H
  • Community annotation for 6E1H at PDBWiki (http://pdbwiki.org)

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