6E2H Protein Binding date Jul 11, 2018
title Crystal Structure Of Human Ash2l (Spry Domain And Sdi Motif) Complex With Full Length Dpy-30
authors M.Joshi, J.S.Brunzelle, J.F.Couture
compound source
Molecule: Set1ash2 Histone Methyltransferase Complex Subun
Chain: D
Synonym: Ash2-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash2l, Ash2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Dpy-30 Homolog
Chain: E, F
Synonym: Dpy-30-Like Protein,Dpy-30l
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpy30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.177 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.011 103.011 129.138 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.24 Å
Gene
Ontology
ChainFunctionProcessComponent
D


F, E
  • chromatin silencing at telom...

  • Primary referenceStructural Analysis of the Ash2L/Dpy-30 Complex Reveals a Heterogeneity in H3K4 Methylation., Haddad JF, Yang Y, Takahashi YH, Joshi M, Chaudhary N, Woodfin AR, Benyoucef A, Yeung S, Brunzelle JS, Skiniotis G, Brand M, Shilatifard A, Couture JF, Structure. 2018 Sep 27. pii: S0969-2126(18)30292-2. doi:, 10.1016/j.str.2018.08.004. PMID:30270175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6e2h.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 6E2H
  • Structure Factors (962 Kb)
  • Retrieve 6E2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E2H from S2C, [Save to disk]
  • View 6E2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E2H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e2h_E] [6e2h_F] [6e2h_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E2H
  • Community annotation for 6E2H at PDBWiki (http://pdbwiki.org)

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