6E33 Transcription date Jul 13, 2018
title Crystal Structure Of Pho7-Dna Complex
authors A.Garg, Y.Goldgur, S.Shuman
compound source
Molecule: Uncharacterized Transcriptional Regulatory Protei C27b12.11c;
Chain: A
Fragment: Residues 279-339
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe (Strain 972 24843);
Organism_common: Fission Yeast
Organism_taxid: 284812
Strain: 972 Atcc 24843
Gene: Pi067, Spbc27b12.11c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'- D(Tpcpcptptpcpgpgpapcpaptptpcpapapaptpcp
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_taxid: 4896

Molecule: Dna (5'- D(Gpaptptptpgpapaptpgptpcpcpgpapapgpgpap
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_taxid: 4896
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.827 40.682 58.237 90.00 105.84 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDistinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis., Garg A, Goldgur Y, Schwer B, Shuman S, Nucleic Acids Res. 2018 Sep 13. pii: 5096077. doi: 10.1093/nar/gky827. PMID:30212894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (6e33.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 6E33
  • CSU: Contacts of Structural Units for 6E33
  • Structure Factors (868 Kb)
  • Retrieve 6E33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E33 from S2C, [Save to disk]
  • View 6E33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e33_C] [6e33_B] [6e33_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E33
  • Community annotation for 6E33 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science